PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g001140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 231aa    MW: 25485.5 Da    PI: 7.9666
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g001140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001681103123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ C+k Fs++  L  H++ H
  Csa20g001140.1  81 FACTFCKKEFSTSQALGGHQNAH 103
                     78******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.1E-578107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.54E-678108No hitNo description
PfamPF139125.9E-680105IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.65581108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MELNLSTPTS CSSSSISSSS HEIIPRTKGK MKEKIAAEPA VETPRLEFRF LFDENIRNSG  60
FGGVLDDEAQ GARNDAKARV FACTFCKKEF STSQALGGHQ NAHKQERSLA KRRKEMEINY  120
PGLSFYSQYP PPSGISYNGS SSSQYDLGVR YNPNIAKTKQ PFPFNVFRCR LGYRGLNIPM  180
LSHLSVPQTD DLSKNLIANL EGNVHVQGEG KDQPDTDTSN DSDIDLSLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490499.11e-172PREDICTED: zinc finger protein 4-like
TrEMBLD7M6E61e-116D7M6E6_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.6__17__AT5G01860.11e-115(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.14e-95C2H2 family protein